Cocoa pods, Venezuela. Photo: C.Lanaud ©CIRAD
Arabica coffee, Ethiopia. Photo: ©Jean-Pierre Labouisse
Yams in Benin. Photo: J-L Pham ©IRD
Rice harvest, Guinea. Photo: J-L Pham ©IRD
Maize corn. Photo: ©Brigitte Gouesnard

Adaptation to climate change

Papers

  • Saïdou AA, Thuillet AC, Couderc M, Mariac C, Vigouroux Y. 2014. Association studies including genotype by environment interactions: prospects and limits. BMC Genetics. 15:3. doi: 10.1186/1471-2156-15-3
  • Saïdou AA, Clotault J, Couderc M, Mariac C, Devos KM, Thuillet AC, Amoukou IA, Vigouroux Y, 2013. Association mapping, patterns of linkage disequilibrium and selection in the vicinity of the PHYTOCHROME C gene in pearl millet. Theor Appl Genet. doi: 10.1007/s00122-013-2197-3
  • Gay L., Siol M. and J. Ronfort. 2013. Pedigree-free estimates of heritability in the wild: Promising prospects for selfing populations. PLoS One 8(6): e66983.  doi: 10.1371/journal.pone.0066983 .
  • De Mita S, Thuillet A-C, Gay L, Ahmadi N, Manel S, Ronfort J, Vigouroux Y. 2013. Detecting selection along environmental gradients: analysis of eight methods and their effectiveness for outbreeding and selfing populations. Molecular Ecology 22:1383-1399  doi:10.1111/mec.12182
  • Loridon K, Burgarella C, Chantret N, Martins F, Gouzy J, Prospéri J-M and J Ronfort. 2013. Single nucleotide polymorphism discovery and diversity in the model legume Medicago truncatula. Molecular Ecology Notes. 13:84-95. doi: 10.1111/1755-0998.12021
  • De Mita S, Siol M. 2012. EggLib: processing, analysis and simulation tools for population genetics and genomics. BMC Genetics13:27. doi:10.1186/1471-2156-13-27
  • Clotault J, Thuillet AC, Buiron M, De Mita S, Couderc M, Haussmann BIG, Mariac C, and Vigouroux Y. 2012. Evolutionary history of pearl millet (Pennisetum glaucum  [L.] R. Br.) and selection on flowering genes since its domestication. Mol. Biol. Evol.  29:1199-1212. doi: 10.1093/molbev/msr287
  • Mariac C, Jehin L, Saïdou A-A, Thuillet A-C, Couderc M, Sire P, Jugdé H, Adam H, Bezançon G, Pham J-L and  Vigouroux Y. 2011. Genetic basis of pearl millet adaptation along an environmental gradient investigated by a combination of genome scan and association mapping. Molecular Ecology, 20:80–91. doi: 10.1111/j.1365-294X.2010.04893.x
  • Vigouroux Y, Mariac C, De Mita S, Pham J-L, Gérard B, et al. 2011. Selection for earlier flowering crop associated with climatic variations in the Sahel. PLoS One 6(5): e19563.
     doi:10.1371/journal.pone.0019563
  • Vigouroux, Y, Barnaud, A, Scarcelli, N, Thuillet, A-C 2011. Biodiversity, evolution and adaptation of cultivated crops (Review)Comptes Rendus - Biologies.  334:450-457. doi:10.1016/j.crvi.2011.03.003

Conferences

  • Chantret N., Ronfort J., Burgarella C., David J., Ecarnot M., Fréville H., Gay L., Gouesnard B., Loridon K., Muller MH., Prosperi JM., Ranwez V., Roumet P., Santoni S., Tavaud-Pirra M., Vigouroux  Y. 2014. Exploiter la diversité génétique pour comprendre les mécanismes de l'adaptation. Journées Scientifiques du Département INRA Biologie et Adaptation des Plantes, 14-16 avril 2014, Pont Royal, France.
  • Ahmadi N. Billot B., Droc G, Brunel D, Frouin J, Ramanantsoanirina A, McNally K, Courtois B, Glaszmann JC. 2013.  Patterns of rice diversity from SNP delineated the origin of the atypical O. sativa group in Madagascar from intermediary forms of the Indian sub-continent. 7th International rice genetics symposium. Nov 5-8, Manila, Philippines.
  • Vigouroux Y. 2013.  Study of the genetic basis of plant adaptation to climate variation. 19 février 2013. Conférence de l'UMR CBGP, Montpellier, France.
  • Vigouroux Y, S De Mita, N Ahmadi, AC Thuillet et J Ronfort. 2012. Study of genetic basis of plant adaptation to climate variation. 18 décembre 2012. Conférence Midipile d'evolution-ecologie de la region sud de Paris, Université Paris-Sud.
  • Burgarella C, Chantret N, Gay L, Prosperi J-M, De Mita S, Young N, Ronfort J. 2012. Effet des variations climatiques sur la variabilité des gènes déterminant la date de floraison : une étude chez Medicago truncatula. 34ème réunion annuelle du groupe de biologie et génétique des populations (le Petit Pois Déridé), 28-31 août 2012, Avignon France.
  • De Mita S, Thuillet AC, Gay L, Ahmadi N, Manel S, Ronfort J, Vigouroux Y. 2012. Detecting selection along environmental gradients: analysis of seven genome scan methods and their effectiveness for outbreeding and selfing population. Jacques Monod Conference “Theoretical and empirical advances in evolutionary genomics”, 31 March-4 April 2012, Roscoff, France.
  • Vigouroux Y. 2011. From genebank collections to functional variation and in situ evolution. Genomics of Genebanks Workshop. Plant and Animal Genome XIX Conference.  January 15-19, 2011. San Diego. USA.
  • Mariac C, Jehin L, Saïdou AA, Thuillet AC, Couderc M, Sire S, Jugdé H, Adam H, Bezançon G, Pham JL, Vigouroux Y. 2011. Genetic basis of pearl millet adaptation along an environmental gradient investigated by a combination of genome scan and association mapping [oral presentation]. Sorghum & millet workshop. Plant and Animal Genome XIX Conference.  January 15-19, 2011. San Diego. USA.
  • Ronfort J, Chantret N, Gay L, De Mita S, Loridon K, Prospéri J-M, Siol M, Bataillon T. 2011. Naturally occurring variation in Medicago truncatula : what have we learn from population genetics studies. Model Legume Congress, May 15-19, 2011, Sainte-Maxime (France).
  • Vigouroux Y. 2011. Adaptation to a changing climate and the genetic basis of flowering time variation in pearl millet.  Colloque Des molécules aux écosystèmes. Faculté de Médecine, 13-14 septembre 2011, Montpellier, France.
  • Vigouroux Y. 2010. Biodiversity, evolution and adaptation of cultivated crops. Conférence débat de l’Académie des Sciences « La biodiversité face aux activités humaines », 9 février 2010, Institut de France, Paris.

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